orphan:
GenerateVardictHeaderLines
· 2 contributors · 1 versionGenerate VarDict Headerlines.
Quickstart
from janis_bioinformatics.tools.pmac.generatevardictheaderlines import GenerateVardictHeaderLines wf = WorkflowBuilder("myworkflow") wf.step( "generatevardictheaderlines_step", GenerateVardictHeaderLines( reference=None, ) ) wf.output("out", source=generatevardictheaderlines_step.out)
OR
- Install Janis
- Ensure Janis is configured to work with Docker or Singularity.
- Ensure all reference files are available:
Note
More information about these inputs are available below.
- Generate user input files for GenerateVardictHeaderLines:
# user inputs
janis inputs GenerateVardictHeaderLines > inputs.yaml
inputs.yaml
reference: reference.fasta
- Run GenerateVardictHeaderLines with:
janis run [...run options] \
--inputs inputs.yaml \
GenerateVardictHeaderLines
Information
------------
:ID: ``GenerateVardictHeaderLines``
URL: | No URL to the documentation was provided |
---|---|
Versions: | v0.1.0 |
Container: | python:3.8.1 |
Authors: | Michael Franklin, Jiaan Yu |
Citations: | None |
Created: | 2020-06-02 00:00:00 |
Updated: | 2020-06-02 00:00:00 |
name type documentation ====== ====== =============================================================== out File Header file for VarDict, generated based on the reference index ====== ====== ===============================================================
name type documentation =============== ================ ===================== reference FastDict output_filename Optional<String> Filename to output to =============== ================ =====================